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Table 2 Primer sequences for quantitative real-time PCR

From: Synthetic lethal short hairpin RNA screening reveals that ring finger protein 183 confers resistance to trametinib in colorectal cancer cells

Gene

Forward sequence

Reverse sequence

Product length (bp)

RNF183

5′-CGAAAAGCTTGAAGGACTGG-3′

5′-TGAAGCAGCTCCAGTGAGAA-3′

166

SELE

5′-GGACACAGCAAATCCCAGTT-3′

5′-CTCCAATAGGGGAATGAGCA-3′

266

ICAM1

5′-GAGATCACCATGGAGCCAAT-3′

5′-CTGACAAGTTGTGGGGGAGT-3′

120

MMP9

5′-TTGACAGCGACAAGAAGTGG-3′

5′-CCCTCAGTGAAGCGGTACAT-3′

129

PLAU

5′-GCCATCCCGGACTATACAGA-3′

5′-ACACAGCATTTTGGTGGTGA-3′

195

CXCR4

5′-TGAGAAGCATGACGGACAAG-3′

5′-GACGCCAACATAGACCACCT-3′

156

IL-8

5′-CTGCGCCAACACAGAAATTAT-3′

5′-CATCTGGCAACCCTACAACAG-3′

214

IL-6

5′-TCAATGAGGAGACTTGCCTGGTGA-3′

5′-TCATCTGCACAGCTCTGGCTTGTT-3′

120

GAPDH

5′-CTCCTCCTGTTCGACAGTCAGC-3′

5′-CCCAATACGACCAAATCCGTT-3′

185

  1. RNF183 ring finger protein 183, SELE selectin E, ICAM1 intercellular adhesion molecule 1, MMP9 matrix metallo peptidase 9, PLAU plasminogen activator urokinase, CXCR4 C-X-C motif chemokine receptor 4, IL-8 interleukin-8, IL-6 interleukin-6, GAPDH glyceraldehyde-3-phosphate dehydrogenase