Gene | SNP (rs number) | Allele | Localization | Call rate (%) | MAF | HWE |
---|---|---|---|---|---|---|
MLH1 | rs10849 | G/A | 3′-UTR | 99.55 | 0.09 | 0.764 |
rs1540354 | A/T | Intron | 97.73 | 0.68 | 0.635 | |
rs749072 | T/C | Intron | 97.73 | 0.62 | 0.217 | |
MSH2 | rs10191478 | T/G | Intron | 97.73 | 0.20 | 0.264 |
rs12999145 | A/G | Intron | 98.64 | 0.53 | 0.783 | |
rs13019654 | G/T | Intron | 96.82 | 0.28 | 0.710 | |
rs1981929 | G/A | Intron | 97.27 | 0.86 | 0.309 | |
rs2303428 | A/C | Intron | 98.64 | 0.33 | 0.234 | |
rs4608577 | T/G | Intron | 93.18 | 0.13 | 0.106 | |
rs4952887 | C/T | Intron | 98.18 | 0.15 | 0.124 | |
rs6544991 | A/C | Intron | 95.00 | 0.36 | 0.605 | |
rs7602094 | T/C | Intron | 95.91 | 0.66 | 0.560 | |
MSH3 | rs245340 | A/C | Intron | 97.73 | 0.24 | 0.203 |
rs245346 | T/C | Intron | 97.73 | 0.45 | 0.738 | |
rs26778 | A/T | Intron | 96.36 | 0.59 | 0.713 | |
rs26784 | T/C | Intron | 97.73 | 0.37 | 0.860 | |
rs3816729 | A/G | Intron | 96.36 | 0.30 | 0.927 | |
rs6151627 | A/G | Intron | 99.09 | 0.29 | 0.554 | |
rs6151670 | C/G | Intron | 98.18 | 0.28 | 0.258 | |
rs6151892 | T/A | Intron | 99.09 | 0.33 | 0.729 | |
rs6151914 | C/T | Intron | 97.73 | 0.09 | 0.065 | |
rs7709909 | C/T | Intron | 99.09 | 0.31 | 0.572 | |
MSH4 | rs3806162 | T/G | 5′ near gene | 99.09 | 0.22 | 0.393 |
rs5745532 | T/C | Intron | 99.09 | 0.75 | 0.112 | |
MSH5 | rs3117572 | G/A | Intron | 98.64 | 0.28 | 0.103 |
rs409558 | A/G | Intron | 100.00 | 0.13 | 0.312 | |
rs707937 | C/G | Intron | 96.82 | 0.42 | 0.369 | |
rs707938 | A/G | Synonymous | 97.27 | 0.30 | 0.428 | |
rs707939 | G/T | Intron | 100.00 | 0.39 | 0.097 | |
rs805304 | C/A | 5′ near gene | 98.18 | 0.69 | 0.448 | |
MSH6 | rs2020910 | T/A | Intron | 99.09 | 0.17 | 0.893 |
rs2348244 | T/C | Intron | 99.09 | 0.39 | 0.856 | |
rs2710163 | T/C | Intron | 98.18 | 0.70 | 0.856 | |
rs3136329 | T/C | Intron | 97.27 | 0.13 | 0.108 | |
rs3732190 | G/A | Intron | 95.91 | 0.09 | 0.933 | |
rs6713506 | G/A | Intron | 98.64 | 0.06 | 0.852 | |
rs6742522 | G/A | Intron | 99.09 | 0.11 | 0.259 |