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Table 2 Primary information and minor allele frequencies (MAFs) of selected single-nuclide polymorphisms (SNPs)

From: Association of microRNA polymorphisms with the risk of head and neck squamous cell carcinoma in a Chinese population: a case–control study

Gene Chromosome SNP Base change Call rates (%) HWE MAF in controls P a P b
Has-miR-149 2q37.3 rs2292832 A>G 99.77 0.092 0.322 0.349 0.436
Pre-miR-146a 5q34 rs2910164 G>C 99.81 0.468 0.429 0.558 0.558
Has-miR-605 10q21.1 rs2043556 A>G 99.77 0.753 0.281 0.004 0.020
Has-miR-608 10q25.1 rs4919510 G>C 99.85 0.835 0.425 0.245 0.408
Pre-miR-196a 12q13.13 rs11614913 A>G 99.91 0.796 0.432 0.019 0.048
  1. Italic value indicate significance of p value (p < 0.05)
  2. HWE Hardy–Weinberg equilibrium, MAF minor allele frequency
  3. aTwo-sided Chi squared test for the comparison of the allele frequency between HNSCC patients and cancer-free controls
  4. b P values adjusted by false discovery rate (FDR) method